schroedinger_coordgenlibs, new recipe (#13480)

requirement for openbabel

dev-libs/schroedinger_coordgenlibs/patches/schroedinger_coordgenlibs-3.0.2.patchset

@@ -0,0 +1,22 @@
+From 85e0cde9548d6f7cf7488ed2d8de274395460e6e Mon Sep 17 00:00:00 2001
+From: Luc Schrijvers <begasus@gmail.com>
+Date: Wed, 24 Dec 2025 16:46:36 +0100
+Subject: Fix installation path for headers
+
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 9df3193..e27fc33 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -125,7 +125,7 @@ install(FILES
+     sketcherMinimizerResidueInteraction.h
+     sketcherMinimizerRing.h
+     sketcherMinimizerStretchInteraction.h
+-    DESTINATION include/coordgen)
++    DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/coordgen)
+ 
+ install(EXPORT coordgen-targets
+     FILE ${PROJECT_NAME}-config.cmake
+-- 
+2.52.0
+

dev-libs/schroedinger_coordgenlibs/schroedinger_coordgenlibs-3.0.2.recipe

@@ -0,0 +1,88 @@
+SUMMARY="Schrodinger-developed 2D Coordinate Generation"
+DESCRIPTION="This is Schrödinger, Inc's 2D coordinate generation. It was formerly proprietary \
+code, but is now released under the BSD license. The emphasis of these algorithms are on quality \
+of 2D coordinates rather than speed of generation. The algorithm distinguishes itself from many \
+others by doing well with both macrocycles and metal complexes. It also does extremely well on \
+typical drug-like small molecules, and has been validated on millions of compounds.
+
+Schrodinger intends to continue to contribute to this code as it still uses it inside its \
+products, but will also be happy if others contribute pull-requests when there are improvements \
+they would like to make. We'll also be happy to hear bug reports or feature requests from use of \
+this code, though make no guarantee on our ability to process these."
+HOMEPAGE="https://github.com/schrodinger/coordgenlibs"
+COPYRIGHT="2017 Schrödinger, Inc."
+LICENSE="BSD (3-clause)"
+REVISION="1"
+SOURCE_URI="https://github.com/schrodinger/coordgenlibs/archive/refs/tags/v$portVersion.tar.gz"
+CHECKSUM_SHA256="f67697434f7fec03bca150a6d84ea0e8409f6ec49d5aab43badc5833098ff4e3"
+SOURCE_DIR="coordgenlibs-$portVersion"
+PATCHES="schroedinger_coordgenlibs-$portVersion.patchset"
+
+ARCHITECTURES="?all ?x86_gcc2"
+SECONDARY_ARCHITECTURES="?x86"
+
+libVersion="$portVersion"
+libVersionCompat="$libVersion compat >= ${libVersion%%.*}"
+
+PROVIDES="
+	schroedinger_coordgenlibs$secondaryArchSuffix = $portVersion
+	lib:libcoordgen$secondaryArchSuffix = $libVersionCompat
+	"
+REQUIRES="
+	haiku$secondaryArchSuffix
+	"
+
+PROVIDES_devel="
+	schroedinger_coordgenlibs${secondaryArchSuffix}_devel = $portVersion
+	devel:libcoordgen$secondaryArchSuffix = $libVersionCompat
+	"
+REQUIRES_devel="
+	schroedinger_coordgenlibs$secondaryArchSuffix == $portVersion base
+	"
+
+BUILD_REQUIRES="
+	haiku${secondaryArchSuffix}_devel
+	devel:libboost_filesystem$secondaryArchSuffix >= 1.88.0
+	devel:libboost_unit_test_framework$secondaryArchSuffix >= 1.88.0
+	devel:libmaeparser$secondaryArchSuffix
+	"
+BUILD_PREREQUIRES="
+	cmd:cmake
+	cmd:gcc$secondaryArchSuffix
+	cmd:make
+	cmd:pkg_config$secondaryArchSuffix
+	"
+
+defineDebugInfoPackage schroedinger_coordgenlibs$secondaryArchSuffix \
+	$libDir/libcoordgen.so.$libVersion
+
+BUILD()
+{
+	cmake -B build -S . -DCMAKE_BUILD_TYPE=RelWithDebInfo \
+		$cmakeDirArgs \
+		-DCMAKE_POLICY_VERSION_MINIMUM=3.5 \
+		-DCMAKE_SKIP_RPATH=YES \
+		-DCOORDGEN_BUILD_EXAMPLE=OFF \
+		-DBUILD_TESTING=OFF \
+		-Wno-dev
+
+	make -C build $jobArgs
+}
+
+INSTALL()
+{
+	make -C build install
+
+	prepareInstalledDevelLib \
+		libcoordgen
+
+	packageEntries devel \
+		$developDir \
+		$libDir/cmake
+}
+
+TEST()
+{
+	export LIBRARY_PATH="$sourceDir/build${LIBRARY_PATH:+:$LIBRARY_PATH}"
+	ctest --test-dir build --output-on-failure
+}