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New Recipe: SCOTCH shared library for graph reduction (#5005)

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This commit is contained in:
Gabriele Baldassarre
2020-05-25 20:22:09 +02:00
committed by GitHub
parent ac61d62250
commit b3b7ae90b3
5 changed files with 982 additions and 0 deletions
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21
sci-libs/scotch/additional-files/Makefile.inc.x86_64_pc_haiku.shlib Normal file
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EXE =
LIB = .so
OBJ = .o
MAKE = make
AR = gcc
ARFLAGS = -shared -o
CAT = cat
CCS = gcc
CCP = mpicc
CCD = gcc
CFLAGS = -O3 -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ -DCOMMON_FILE_COMPRESS_LZMA -DCOMMON_PTHREAD -DCOMMON_PTHREAD_FILE -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict=__restrict -DIDXSIZE64
CLIBFLAGS = -shared -fPIC
LDFLAGS = -lz -llzma -lbz2 -lm -Xlinker --no-as-needed
CP = cp
LEX = flex -Pscotchyy -olex.yy.c
LN = ln
MKDIR = mkdir -p
MV = mv
RANLIB = echo
YACC = bison -pscotchyy -y -b y

21
sci-libs/scotch/additional-files/Makefile.inc.x86_pc_haiku.shlib Normal file
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EXE =
LIB = .so
OBJ = .o
MAKE = make
AR = gcc
ARFLAGS = -shared -o
CAT = cat
CCS = gcc
CCP = mpicc
CCD = gcc
CFLAGS = -O3 -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ -DCOMMON_FILE_COMPRESS_LZMA -DCOMMON_PTHREAD -DCOMMON_PTHREAD_FILE -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict=__restrict
CLIBFLAGS = -shared -fPIC
LDFLAGS = -lz -llzma -lbz2 -lm -Xlinker --no-as-needed
CP = cp
LEX = flex -Pscotchyy -olex.yy.c
LN = ln
MKDIR = mkdir -p
MV = mv
RANLIB = echo
YACC = bison -pscotchyy -y -b y

517
sci-libs/scotch/licenses/CeCILL-C Normal file
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CeCILL-C FREE SOFTWARE LICENSE AGREEMENT
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Version 1.0 dated 2006-09-05.

198
sci-libs/scotch/patches/scotch-6.0.9.patchset Normal file
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From 7a6ee74fe3be18e7fe09f19511e8fd00e129baa3 Mon Sep 17 00:00:00 2001
From: Gabriele Baldassarre <gabriele@gabrielebaldassarre.com>
Date: Sun, 17 May 2020 22:03:14 +0000
Subject: Fix order of arguments in gcc
diff --git a/src/check/Makefile b/src/check/Makefile
index 171e94e..864b44c 100644
--- a/src/check/Makefile
+++ b/src/check/Makefile
@@ -61,7 +61,7 @@ include ../Makefile.inc
$(CC) $(CFLAGS) $(CLIBFLAGS) -I$(SCOTCHINCDIR) -c $(<) -o $(@)
%$(EXE) : %.c
- $(CC) $(CFLAGS) -I$(SCOTCHINCDIR) -L$(SCOTCHLIBDIR) $(<) -o $(@) $(SCOTCHLIBS) $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(SCOTCHINCLUDEDIR) -L$(SCOTCHLIBDIR) $(<) $(SCOTCHLIBS) $(LIBS) -o $(@)
##
## Project rules.
diff --git a/src/esmumps/Makefile b/src/esmumps/Makefile
index cca7b51..d08571a 100644
--- a/src/esmumps/Makefile
+++ b/src/esmumps/Makefile
@@ -44,7 +44,7 @@ include ../Makefile.inc
$(CC) $(CFLAGS) $(CLIBFLAGS) -I$(includedir) -c $(<) -o $(@)
%$(EXE) : %.c
- $(CC) $(CFLAGS) -I$(includedir) $(<) -o $(@) -L. -lesmumps -L$(libdir) -lscotch -lscotcherrexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) $(<) -L$(libdir) -L. -l$(ESMUMPSLIB) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LIBS) -o $(@)
##
## Project rules.
@@ -52,7 +52,7 @@ include ../Makefile.inc
.PHONY : ptscotch scotch ptinstall install clean realclean
-scotch : clean
+scotch : clean common.h
$(MAKE) CC="$(CCS)" CCD="$(CCS)" \
libesmumps$(LIB) \
main_esmumps$(EXE)
diff --git a/src/libscotch/Makefile b/src/libscotch/Makefile
index 3c32d69..bc9bcd5 100644
--- a/src/libscotch/Makefile
+++ b/src/libscotch/Makefile
@@ -50,7 +50,7 @@ endif
$(CC) $(CFLAGS) $(CLIBFLAGS) -c $(<) -o $(@) -DSCOTCH_VERSION_NUM=$(VERSION) -DSCOTCH_RELEASE_NUM=$(RELEASE) -DSCOTCH_PATCHLEVEL_NUM=$(PATCHLEVEL)
%$(EXE) : %.c
- $(CC) $(CFLAGS) -DSCOTCH_VERSION_NUM=$(VERSION) -DSCOTCH_RELEASE_NUM=$(RELEASE) -DSCOTCH_PATCHLEVEL_NUM=$(PATCHLEVEL) $(<) -o $(@) $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) $(LIBS) -o $(@)
##
## Project rules.
@@ -3067,14 +3067,14 @@ dummysizes$(EXE) : dummysizes.c \
mapping.h \
order.h \
parser.h
- $(CCD) $(CCDFLAGS) -DSCOTCH_VERSION_NUM=$(VERSION) -DSCOTCH_RELEASE_NUM=$(RELEASE) -DSCOTCH_PATCHLEVEL_NUM=$(PATCHLEVEL) $(<) -o $(@) $(LDFLAGS)
+ $(CCD) $(CFLAGS) $(LDFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) $(LIBS) -o $(@)
ptdummysizes$(EXE) : dummysizes.c \
module.h \
common.h \
dgraph.h \
dorder.h
- $(CCD) $(CCDFLAGS) -DSCOTCH_VERSION_NUM=$(VERSION) -DSCOTCH_RELEASE_NUM=$(RELEASE) -DSCOTCH_PATCHLEVEL_NUM=$(PATCHLEVEL) $(<) -o $(@) $(LDFLAGS)
+ $(CCD) $(CFLAGS) $(LDFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) $(LIBS) -o $(@)
scotch.h : dummysizes$(EXE) \
library.h
diff --git a/src/libscotch/parser_ll.l b/src/libscotch/parser_ll.l
index 82450f1..9a593d0 100644
--- a/src/libscotch/parser_ll.l
+++ b/src/libscotch/parser_ll.l
@@ -86,16 +86,25 @@
#ifdef FLEX_SCANNER
#define YY_ALWAYS_INTERACTIVE 1 /* Set the parser as interactive and read one char at a time */
#define YY_INPUT(buf,result,max_size) { int c = stratParserInput (); result = (c == 0) ? YY_NULL : ((buf)[0] = c, 1); }
+
+# if YY_FLEX_MAJOR_VERSION > 2 || \
+ YY_FLEX_MAJOR_VERSION == 2 && YY_FLEX_MINOR_VERSION > 6 || \
+ YY_FLEX_MAJOR_VERSION == 2 && YY_FLEX_MINOR_VERSION == 6 && YY_FLEX_SUBMINOR_VERSION >= 3
+ int yywrap() { return 1; }
+# else
+# define yywrap() (1) /* Always return end-of-file on end-of-string */
+# endif
+
#else /* FLEX_SCANNER */
#undef getc /* Redirect I/O functions */
#define getc yygetc
#undef yygetc
#define yygetc(stream) stratParserInput ()
+#define yywrap() (1) /* Always return end-of-file on end-of-string */
#endif /* FLEX_SCANNER */
#define YY_NO_UNPUT /* No prototype for yyunput as not defined */
#define YY_SKIP_YYWRAP /* No prototype for yywrap as defined as macro */
-#define yywrap() (1) /* Always return end-of-file on end-of-string */
/*
** The static variables.
diff --git a/src/scotch/Makefile b/src/scotch/Makefile
index 7bd0c5b..758db08 100644
--- a/src/scotch/Makefile
+++ b/src/scotch/Makefile
@@ -41,13 +41,13 @@ libdir = ../../lib
include ../Makefile.inc
%$(EXE) : %$(OBJ)
- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -o $(@) -L$(libdir) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) -I../libscotch $(<) -L$(libdir) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LIBS) -o $(@)
%$(OBJ) : %.c
$(CC) $(CFLAGS) -I$(includedir) -I../libscotch -c $(<) -o $(@)
%$(EXE) : %.c
- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -o $(@) -L$(libdir) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) -I../libscotch $(<) -L$(libdir) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LIBS) -o $(@)
##
## Project rules.
@@ -209,7 +209,7 @@ dgpart$(EXE) : dgmap.c \
$(libdir)/libptscotch$(LIB) \
$(libdir)/libptscotcherrexit$(LIB) \
dgmap.h
- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -o $(@) -L$(libdir) -lptscotch -lscotch -lptscotcherrexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -L$(libdir) -lptscotch -lscotch -lptscotcherrexit $(LIBS) -o $(@)
dgscat$(EXE) : dgscat.c \
../libscotch/module.h \
@@ -321,7 +321,7 @@ gout$(EXE) : gout_c.c \
gout_o.c \
$(includedir)/scotch.h \
$(libdir)/libscotch$(LIB)
- $(CC) $(CFLAGS) -I../libscotch -I$(includedir) gout_c.c gout_o.c -o $(@) -L$(libdir) -lscotch -lscotcherrexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I../libscotch -I$(includedir) gout_c.c gout_o.c -L$(libdir) -lscotch -lscotcherrexit $(LIBS) -o $(@)
gpart$(EXE) : gmap.c \
../libscotch/module.h \
@@ -330,7 +330,7 @@ gpart$(EXE) : gmap.c \
$(libdir)/libscotch$(LIB) \
$(libdir)/libscotcherrexit$(LIB) \
gmap.h
- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -o $(@) -L$(libdir) -lscotch -lscotcherrexit $(LDFLAGS)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -L$(libdir) -lscotch -lscotcherrexit $(LIBS) -o $(@)
gscat$(EXE) : gscat.c \
../libscotch/module.h \
--
2.26.0
From f42d8fdfc0d14c5ef0abc86f1f249ce0d7835225 Mon Sep 17 00:00:00 2001
From: Gabriele Baldassarre <gabriele@gabrielebaldassarre.com>
Date: Mon, 18 May 2020 20:05:36 +0000
Subject: Hardwrite lib names in esmumps
diff --git a/src/esmumps/Makefile b/src/esmumps/Makefile
index d08571a..2cfe2d5 100644
--- a/src/esmumps/Makefile
+++ b/src/esmumps/Makefile
@@ -44,7 +44,7 @@ include ../Makefile.inc
$(CC) $(CFLAGS) $(CLIBFLAGS) -I$(includedir) -c $(<) -o $(@)
%$(EXE) : %.c
- $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) $(<) -L$(libdir) -L. -l$(ESMUMPSLIB) -l$(SCOTCHLIB) -lscotch -l$(SCOTCHLIB)errexit $(LIBS) -o $(@)
+ $(CC) $(CFLAGS) $(LDFLAGS) -I$(includedir) $(<) -L$(libdir) -L. -lesmumps -lscotch -lscotcherrexit $(LIBS) -o $(@)
##
## Project rules.
--
2.26.0
From 38d538d48bbdc4b728f325e7ea696646c562c220 Mon Sep 17 00:00:00 2001
From: Gabriele Baldassarre <gabriele@gabrielebaldassarre.com>
Date: Tue, 19 May 2020 23:12:30 +0000
Subject: Fix includedir path
diff --git a/src/check/Makefile b/src/check/Makefile
index 864b44c..3d3ef0a 100644
--- a/src/check/Makefile
+++ b/src/check/Makefile
@@ -61,7 +61,7 @@ include ../Makefile.inc
$(CC) $(CFLAGS) $(CLIBFLAGS) -I$(SCOTCHINCDIR) -c $(<) -o $(@)
%$(EXE) : %.c
- $(CC) $(CFLAGS) $(LDFLAGS) -I$(SCOTCHINCLUDEDIR) -L$(SCOTCHLIBDIR) $(<) $(SCOTCHLIBS) $(LIBS) -o $(@)
+ $(CC) $(CFLAGS) $(SCOTCHLIBS) $(LDFLAGS) -I$(SCOTCHINCDIR) -L$(SCOTCHLIBDIR) $(<) $(LIBS) -o $(@)
##
## Project rules.
--
2.26.0

225
sci-libs/scotch/scotch-6.0.9.recipe Normal file
View File

@@ -0,0 +1,225 @@
SUMMARY="Software for graph, mesh and hypergraph partitioning"
DESCRIPTION="SCOTCH is a software package and libraries for graph, mesh and \
hypergraph partitioning, static mapping, and sparse matrix block ordering.
Its purpose is to apply graph theory, with a divide and \
conquer approach, to scientific computing problems such as graph and \
mesh partitioning, static mapping, and sparse matrix ordering, in \
application domains ranging from structural mechanics to operating \
systems or bio-chemistry.
The SCOTCH distribution is a set of programs and libraries which \
implement the static mapping and sparse matrix reordering algorithms \
developed within the SCOTCH project."
HOMEPAGE="http://www.labri.u-bordeaux.fr/perso/pelegrin/scotch/"
COPYRIGHT="2002-2020 Francois Pellegrini, LABRI"
LICENSE="CeCILL-C"
REVISION="1"
SOURCE_URI="https://gforge.inria.fr/frs/download.php/latestfile/298/scotch_$portVersion.tar.gz"
CHECKSUM_SHA256="622b4143cf01c480bb15708b3651b29c25e4aeb00c8c6447ff196aca2eca5c93"
PATCHES="scotch-$portVersion.patchset"
SOURCE_DIR="scotch_$portVersion"
ADDITIONAL_FILES="
Makefile.inc.x86_64_pc_haiku.shlib
Makefile.inc.x86_pc_haiku.shlib
"
ARCHITECTURES="!x86_gcc2 x86_64 ?arm ?ppc ?sparc"
SECONDARY_ARCHITECTURES="x86"
commandSuffix=$secondaryArchSuffix
commandBinDir=$binDir
if [ "$targetArchitecture" = x86_gcc2 ]; then
commandSuffix=
commandBinDir=$prefix/bin
fi
portVersionCompat="$portVersion compat >= ${portVersion%%.*}"
libVersion=$portVersion
libVersionCompat="$libVersion compat >= ${libVersion%%.*}"
PROVIDES="
scotch$secondaryArchSuffix = $portVersionCompat
lib:libesmumps$secondaryArchSuffix = $libVersionCompat
lib:libscotch$secondaryArchSuffix = $libVersionCompat
lib:libscotcherr$secondaryArchSuffix = $libVersionCompat
lib:libscotcherrexit$secondaryArchSuffix = $libVersionCompat
lib:libscotchmetis$secondaryArchSuffix = $libVersionCompat
"
REQUIRES="
haiku$secondaryArchSuffix
lib:liblzma$secondaryArchSuffix
lib:libbz2$secondaryArchSuffix
lib:libz$secondaryArchSuffix
"
PROVIDES_devel="
scotch${secondaryArchSuffix}_devel = $portVersionCompat
devel:libesmumps$secondaryArchSuffix = $libVersionCompat
devel:libscotch$secondaryArchSuffix = $libVersionCompat
devel:libscotcherr$secondaryArchSuffix = $libVersionCompat
devel:libscotcherrexit$secondaryArchSuffix = $libVersionCompat
devel:libscotchmetis$secondaryArchSuffix = $libVersionCompat
"
REQUIRES_devel="
scotch$secondaryArchSuffix == $portVersion base
"
PROVIDES_tools="
scotch${secondaryArchSuffix}_tools = $portVersionCompat
cmd:acpl$commandSuffix = $portVersionCompat
cmd:amk_ccc$commandSuffix = $portVersionCompat
cmd:amk_fft2$commandSuffix = $portVersionCompat
cmd:amk_grf$commandSuffix = $portVersionCompat
cmd:amk_hy$commandSuffix = $portVersionCompat
cmd:amk_m2$commandSuffix = $portVersionCompat
cmd:amk_p2$commandSuffix = $portVersionCompat
cmd:atst$commandSuffix = $portVersionCompat
cmd:gbase$commandSuffix = $portVersionCompat
cmd:gcv$commandSuffix = $portVersionCompat
cmd:gmap$commandSuffix = $portVersionCompat
cmd:gmk_hy$commandSuffix = $portVersionCompat
cmd:gmk_m2$commandSuffix = $portVersionCompat
cmd:gmk_m3$commandSuffix = $portVersionCompat
cmd:gmk_msh$commandSuffix = $portVersionCompat
cmd:gmk_ub2$commandSuffix = $portVersionCompat
cmd:gmtst$commandSuffix = $portVersionCompat
cmd:gord$commandSuffix = $portVersionCompat
cmd:gotst$commandSuffix = $portVersionCompat
cmd:gout$commandSuffix = $portVersionCompat
cmd:gpart$commandSuffix = $portVersionCompat
cmd:gscat$commandSuffix = $portVersionCompat
cmd:gtst$commandSuffix = $portVersionCompat
cmd:mcv$commandSuffix = $portVersionCompat
cmd:mmk_m2$commandSuffix = $portVersionCompat
cmd:mmk_m3$commandSuffix = $portVersionCompat
cmd:mord$commandSuffix = $portVersionCompat
cmd:mtst$commandSuffix = $portVersionCompat
"
REQUIRES_tools="
scotch$secondaryArchSuffix == $portVersion base
haiku$secondaryArchSuffix
lib:liblzma$secondaryArchSuffix
lib:libbz2$secondaryArchSuffix
lib:libz$secondaryArchSuffix
"
BUILD_REQUIRES="
haiku${secondaryArchSuffix}_devel
devel:liblzma$secondaryArchSuffix
devel:libbz2$secondaryArchSuffix
devel:libz$secondaryArchSuffix
"
BUILD_PREREQUIRES="
cmd:bison
cmd:gcc$secondaryArchSuffix
cmd:flex
cmd:make
"
TEST_REQUIRES="
cmd:diff
"
defineDebugInfoPackage scotch$secondaryArchSuffix \
"$libDir"/libesmumps.so \
"$libDir"/libscotch.so \
"$libDir"/libscotcherr.so \
"$libDir"/libscotcherrexit.so\
"$libDir"/libscotchmetis.so
PATCH()
{
# make install will fail because these binaries are missing
# This could be caused by the ptscotch target which has been disabled on this release
# Thus, this is not going to be a permanent patch, hence it is not
# in the main patch set
sed -i 's|-\$(CP) -f \.\./bin/d\[agm\]\*\$(EXE) \$(bindir)||g' src/Makefile
}
BUILD()
{
cp "$portDir"/additional-files/Makefile.inc."${effectiveTargetArchitecture}"_pc_haiku.shlib src/Makefile.inc
make -C src $jobArgs scotch esmumps
}
INSTALL()
{
declare -a destdirs=("$commandBinDir" "$includeDir" "$includeDir" "$libDir" "$libDir"/pkgconfig "$dataDir" "$manDir")
for i in "${destdirs[@]}"
do
mkdir -p ${i}
done
make -C src $jobArgs bindir=$commandBinDir includedir=$includeDir libdir=$libDir datarootdir=$dataDir mandir=$manDir install
# create symlinks
declare -a libraries=("libesmumps" "libscotch" "libscotcherr" "libscotcherrexit" "libscotchmetis")
for soname in "${libraries[@]}"
do
ln -s ${libDir}/${soname}.so ${libDir}/${soname}.so.$libVersion
ln -s ${libDir}/${soname}.so ${libDir}/${soname}.so.${libVersion%%.*}
done
cat <<-EOF > $libDir/pkgconfig/scotch.pc
prefix=${prefix}
exec_prefix=${prefix}
libdir=\${prefix}/develop/lib
includedir=\${prefix}/develop/headers
Name: scotch
Description: ${SUMMARY}
Version: ${portVersion}
URL: ${HOMEPAGE}
Libs: -L\${libdir} -lscotcherr -lscotch
Private: -lz -llzma -lbz2 -lm
Cflags: -I\${includedir}
EOF
cat <<-EOF > $libDir/pkgconfig/scotchmetis.pc
prefix=${prefix}
libdir=\${prefix}/develop/lib
includedir=\${prefix}/develop/headers
Name: scotchmetis
Description: ${SUMMARY}
Version: ${portVersion}
URL: ${HOMEPAGE}
Libs: -L\${libdir} -lscotchmetis -lscotcherr -lscotch
Private: -lz -llzma -lbz2 -lm
Cflags: -I\${includedir}
EOF
prepareInstalledDevelLibs `printf '%s\n' "$(IFS=' '; printf '%s' "${libraries[*]}")"`
fixPkgconfig
# copy pdf documentation
mkdir -p $developDocDir
cp -rd doc/*.pdf $developDocDir
# devel package
packageEntries devel $developDir
# tools package
packageEntries tools $commandBinDir $manDir
}
TEST()
{
export LIBRARY_PATH=$LIBRARY_PATH:$sourceDir/lib
# The (non-standard) Makefile used to perform the tests has some relative paths in it which
# won't work from HP (although they will from bare Terminal).
# Makefile is patched just to have these paths overridable by command line
sed -i 's|= \.\.\/\.\.\/|?= \.\.\/\.\.\/|g' src/check/Makefile
# NOTE:
# Tests are commented out because for two reasons:
# 1. They don't work from HP (Makefile issue?)
# 2. Some of them will hang (bug in source code and/or incompatibilities with Haiku?)
SCOTCHBINDIR="$sourceDir/bin" \
SCOTCHLIBDIR="$sourceDir/lib" \
SCOTCHINCDIR="$sourceDir/include" \
SCOTCHTGTDIR="$sourceDir/tgt" \
make -C src check $jobArgs
}