Modified the pathnames.h file to put use haiku specific directories, some of these may be wrong, so more changes probably to come

net-misc/openssh/openssh-5.4p1.bep

@@ -6,6 +6,7 @@ STATUS_HAIKU="stable"
 DEPEND="openssl"
 CHECKSUM_MD5="da10af8a789fa2e83e3635f3a1b76f5e"
 BUILD {
+	cp ../patches/pathnames-haiku.h openssh-5.4p1/pathnames.h
 	cd openssh-5.4p1
 	mkdir -p m4
 	cp /boot/common/share/aclocal/libtool.m4 m4
@@ -14,11 +15,11 @@ BUILD {
 	cp /boot/common/share/aclocal/ltsugar.m4 m4
 	cp /boot/common/share/aclocal/lt~obsolete.m4 m4
 	echo 'AC_CONFIG_MACRO_DIR([m4])' >> configure.ac
-	libtoolize --force --copy --install
+	libtoolize --force --copy
 	aclocal -I m4
 	autoconf
 	./configure --prefix=`finddir B_COMMON_DIRECTORY` \
-	--sbindir=`finddir B_COMMON_DIRECTORY`/sbin \
+	--sbindir=`finddir B_COMMON_BIN_DIRECTORY` \
 	--bindir=`finddir B_COMMON_BIN_DIRECTORY` \
 	--libexecdir=`finddir B_COMMON_LIB_DIRECTORY` \
 	--sysconfdir=`finddir B_USER_SETTINGS_DIRECTORY`/ssh \
@@ -27,6 +28,18 @@ BUILD {
 	--datadir=`finddir B_COMMON_DATA_DIRECTORY` \
 	--mandir=`finddir B_COMMON_DIRECTORY`/man \
 	--docdir=`finddir B_COMMON_DOCUMENTATION_DIRECTORY` \
+	--sysconfdir=`finddir B_COMMON_SETTINGS_DIRECTORY`/ssh \
+	--sharedstatedir=/boot/home/1 \
+	--localstatedir=/boot/home/2 \
+	--includedir=/boot/home/3 \
+	--oldincludedir=/boot/home/4 \
+	--datarootdir=/boot/home/5 \
+	--infodir=/boot/home/6 \
+	--localedir=/boot/home/7 \
+	--htmldir=/boot/home/8 \
+	--dvidir=/boot/home/9 \
+	--pdfdir=/boot/home/10 \
+	--psdir=/boot/home/11 \
 	--with-md5-passwords
 	make
 }

net-misc/openssh/patches/pathnames-haiku.h

@@ -0,0 +1,186 @@
+/* $OpenBSD: pathnames.h,v 1.19 2010/02/11 20:37:47 djm Exp $ */
+
+/*
+ * Author: Tatu Ylonen <ylo@cs.hut.fi>
+ * Copyright (c) 1995 Tatu Ylonen <ylo@cs.hut.fi>, Espoo, Finland
+ *                    All rights reserved
+ *
+ * As far as I am concerned, the code I have written for this software
+ * can be used freely for any purpose.  Any derived versions of this
+ * software must be clearly marked as such, and if the derived work is
+ * incompatible with the protocol description in the RFC file, it must be
+ * called by a name other than "ssh" or "Secure Shell".
+ */
+
+#define HAIKU_USER_SETTINGS_DIRECTORY	"/boot/home/config/settings"
+#define HAIKU_COMMON_ETC_DIRECTORY		"/boot/common/etc"
+#define HAIKU_COMMON_BIN_DIRECTORY		"/boot/common/bin"
+#define HAIKU_COMMON_VAR_DIRECTORY		"/boot/common/var"
+#define HAIKU_COMMON_SERVERS_DIRECTORY	"/boot/common/servers"
+#define HAIKU_SYSTEM_BIN_DIRECTORY		"/boot/system/bin"
+
+
+#define ETCDIR				HAIKU_COMMON_ETC_DIRECTORY
+
+#ifndef SSHDIR
+#define SSHDIR				ETCDIR "/ssh"
+#endif
+
+#ifndef _PATH_SSH_PIDDIR
+#define _PATH_SSH_PIDDIR		"/var/run"
+#endif
+
+/*
+ * System-wide file containing host keys of known hosts.  This file should be
+ * world-readable.
+ */
+#define _PATH_SSH_SYSTEM_HOSTFILE	SSHDIR "/ssh_known_hosts"
+/* backward compat for protocol 2 */
+#define _PATH_SSH_SYSTEM_HOSTFILE2	SSHDIR "/ssh_known_hosts2"
+
+/*
+ * Of these, ssh_host_key must be readable only by root, whereas ssh_config
+ * should be world-readable.
+ */
+#define _PATH_SERVER_CONFIG_FILE	SSHDIR "/sshd_config"
+#define _PATH_HOST_CONFIG_FILE		SSHDIR "/ssh_config"
+#define _PATH_HOST_KEY_FILE		SSHDIR "/ssh_host_key"
+#define _PATH_HOST_DSA_KEY_FILE		SSHDIR "/ssh_host_dsa_key"
+#define _PATH_HOST_RSA_KEY_FILE		SSHDIR "/ssh_host_rsa_key"
+#define _PATH_DH_MODULI			SSHDIR "/moduli"
+/* Backwards compatibility */
+#define _PATH_DH_PRIMES			SSHDIR "/primes"
+
+#ifndef _PATH_SSH_PROGRAM
+#define _PATH_SSH_PROGRAM		B_COMMON_BIN_DIRECTORY
+#endif
+
+/*
+ * The process id of the daemon listening for connections is saved here to
+ * make it easier to kill the correct daemon when necessary.
+ */
+#define _PATH_SSH_DAEMON_PID_FILE	_PATH_SSH_PIDDIR "/sshd.pid"
+
+/*
+ * The directory in user's home directory in which the files reside. The
+ * directory should be world-readable (though not all files are).
+ */
+#define _PATH_SSH_USER_DIR		"config/settings/ssh"
+
+/*
+ * Per-user file containing host keys of known hosts.  This file need not be
+ * readable by anyone except the user him/herself, though this does not
+ * contain anything particularly secret.
+ */
+#define _PATH_SSH_USER_HOSTFILE		_PATH_SSH_USER_DIR "/known_hosts"
+/* backward compat for protocol 2 */
+#define _PATH_SSH_USER_HOSTFILE2	_PATH_SSH_USER_DIR "/known_hosts2"
+
+/*
+ * Name of the default file containing client-side authentication key. This
+ * file should only be readable by the user him/herself.
+ */
+#define _PATH_SSH_CLIENT_IDENTITY	_PATH_SSH_USER_DIR "/identity"
+#define _PATH_SSH_CLIENT_ID_DSA		_PATH_SSH_USER_DIR "/id_dsa"
+#define _PATH_SSH_CLIENT_ID_RSA		_PATH_SSH_USER_DIR "/id_rsa"
+
+/*
+ * Configuration file in user's home directory.  This file need not be
+ * readable by anyone but the user him/herself, but does not contain anything
+ * particularly secret.  If the user's home directory resides on an NFS
+ * volume where root is mapped to nobody, this may need to be world-readable.
+ */
+#define _PATH_SSH_USER_CONFFILE		_PATH_SSH_USER_DIR "/config"
+
+/*
+ * File containing a list of those rsa keys that permit logging in as this
+ * user.  This file need not be readable by anyone but the user him/herself,
+ * but does not contain anything particularly secret.  If the user's home
+ * directory resides on an NFS volume where root is mapped to nobody, this
+ * may need to be world-readable.  (This file is read by the daemon which is
+ * running as root.)
+ */
+#define _PATH_SSH_USER_PERMITTED_KEYS	_PATH_SSH_USER_DIR "/authorized_keys"
+
+/* backward compat for protocol v2 */
+#define _PATH_SSH_USER_PERMITTED_KEYS2	_PATH_SSH_USER_DIR "/authorized_keys2"
+
+/*
+ * Per-user and system-wide ssh "rc" files.  These files are executed with
+ * /bin/sh before starting the shell or command if they exist.  They will be
+ * passed "proto cookie" as arguments if X11 forwarding with spoofing is in
+ * use.  xauth will be run if neither of these exists.
+ */
+#define _PATH_SSH_USER_RC		_PATH_SSH_USER_DIR "/rc"
+#define _PATH_SSH_SYSTEM_RC		SSHDIR "/sshrc"
+
+/*
+ * Ssh-only version of /etc/hosts.equiv.  Additionally, the daemon may use
+ * ~/.rhosts and /etc/hosts.equiv if rhosts authentication is enabled.
+ */
+#define _PATH_SSH_HOSTS_EQUIV		SSHDIR "/shosts.equiv"
+#define _PATH_RHOSTS_EQUIV		"/etc/hosts.equiv"
+
+/*
+ * Default location of askpass
+ */
+#ifndef _PATH_SSH_ASKPASS_DEFAULT
+#define _PATH_SSH_ASKPASS_DEFAULT	"/usr/X11R6/bin/ssh-askpass"
+#endif
+
+/* Location of ssh-keysign for hostbased authentication */
+#ifndef _PATH_SSH_KEY_SIGN
+#define _PATH_SSH_KEY_SIGN		"/usr/libexec/ssh-keysign"
+#endif
+
+/* Location of ssh-pkcs11-helper to support keys in tokens */
+#ifndef _PATH_SSH_PKCS11_HELPER
+#define _PATH_SSH_PKCS11_HELPER		"/usr/libexec/ssh-pkcs11-helper"
+#endif
+
+/* xauth for X11 forwarding */
+#ifndef _PATH_XAUTH
+#define _PATH_XAUTH			"/usr/X11R6/bin/xauth"
+#endif
+
+/* UNIX domain socket for X11 server; displaynum will replace %u */
+#ifndef _PATH_UNIX_X
+#define _PATH_UNIX_X "/tmp/.X11-unix/X%u"
+#endif
+
+/* for scp */
+#ifndef _PATH_CP
+#define _PATH_CP			"cp"
+#endif
+
+/* for sftp */
+#ifndef _PATH_SFTP_SERVER
+#define _PATH_SFTP_SERVER		HAIKU_COMMON_SERVERS_DIRECTORY "/sftp-server"
+#endif
+
+/* chroot directory for unprivileged user when UsePrivilegeSeparation=yes */
+#ifndef _PATH_PRIVSEP_CHROOT_DIR
+#define _PATH_PRIVSEP_CHROOT_DIR	HAIKU_COMMON_VAR_DIRECTORY "/empty"
+#endif
+/* for passwd change */
+#ifndef _PATH_PASSWD_PROG
+#define _PATH_PASSWD_PROG             HAIKU_SYSTEM_BIN_DIRECTORY "/passwd"
+#endif
+
+#ifndef _PATH_LS
+#define _PATH_LS			"ls"
+#endif
+
+/* path to login program */
+#ifndef LOGIN_PROGRAM
+# ifdef LOGIN_PROGRAM_FALLBACK
+#  define LOGIN_PROGRAM         LOGIN_PROGRAM_FALLBACK
+# else
+#  define LOGIN_PROGRAM         HAIKU_SYSTEM_BIN_DIRECTORY "/login"
+# endif
+#endif /* LOGIN_PROGRAM */
+
+/* Askpass program define */
+#ifndef ASKPASS_PROGRAM
+#define ASKPASS_PROGRAM         HAIKU_COMMON_BIN_DIRECTORY "/ssh/ssh-askpass"
+#endif /* ASKPASS_PROGRAM */