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R, bump to version 4.5.0 (#12167)
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Schrijvers Luc
GitHub
@@ -1,4 +1,4 @@
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From ac3e0f366781c1ee7e0eee627024e0e5311f49b3 Mon Sep 17 00:00:00 2001
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From 81a0109ca214a8274f720572b03e76f653ee1052 Mon Sep 17 00:00:00 2001
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From: Schrijvers Luc <begasus@gmail.com>
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Date: Sun, 12 Jan 2025 08:57:01 +0100
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Subject: Add #include <sys/select.h> for missing fd_set
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@@ -20,5 +20,5 @@ index 951b422..a636579 100644
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extern "C" {
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#endif
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--
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2.45.2
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2.48.1
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@@ -1,159 +0,0 @@
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SUMMARY="A programming language primarily for statistics and numerical analysis"
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DESCRIPTION="R is GNU S, a system for statistical computation and graphics. \
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It consists of a language plus a run-time environment with graphics, a \
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debugger, access to certain system functions, and the ability to run programs \
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stored in script files. The core of R is an interpreted computer language \
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which allows branching and looping as well as modular programming using \
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functions. The R distribution contains functionality for a large number of \
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statistical procedures such as: linear and generalized linear models, \
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nonlinear regression models, time series analysis, classical parametric and \
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nonparametric tests, clustering, smoothing and graphical data \
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representations. Additional modules ('add-on packages') are available for a \
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variety of specific purposes but are not distributed with this package."
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HOMEPAGE="https://www.r-project.org/"
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COPYRIGHT="2024 The R Foundation for Statistical Computing"
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LICENSE="GNU GPL v2"
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REVISION="1"
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SOURCE_URI="https://cloud.r-project.org/src/base/R-4/R-$portVersion.tar.gz"
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CHECKSUM_SHA256="b4cb675deaaeb7299d3b265d218cde43f192951ce5b89b7bb1a5148a36b2d94d"
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SOURCE_DIR="R-$portVersion"
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ARCHITECTURES="all !x86_gcc2"
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SECONDARY_ARCHITECTURES="!x86_gcc2 x86"
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commandBinDir=$binDir
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commandSuffix=$secondaryArchSuffix
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if [ "$targetArchitecture" = x86_gcc2 ]; then
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commandSuffix=
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commandBinDir=$prefix/bin
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fi
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PROVIDES="
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r$secondaryArchSuffix = $portVersion
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cmd:r$commandSuffix
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cmd:rscript$commandSuffix
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lib:libRmath$secondaryArchSuffix
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devel:libRmath$secondaryArchSuffix
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"
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REQUIRES="
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haiku$secondaryArchSuffix
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cmd:less
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lib:libbz2$secondaryArchSuffix
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# lib:libcairo$secondaryArchSuffix
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lib:libcrypto$secondaryArchSuffix
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lib:libcurl$secondaryArchSuffix
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lib:libgettextpo$secondaryArchSuffix
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lib:libgfortran$secondaryArchSuffix
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lib:libgomp$secondaryArchSuffix
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lib:libiconv$secondaryArchSuffix
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lib:libicui18n$secondaryArchSuffix
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lib:libintl$secondaryArchSuffix
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lib:libjpeg$secondaryArchSuffix
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lib:liblapack$secondaryArchSuffix
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lib:liblzma$secondaryArchSuffix
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lib:libncursesw$secondaryArchSuffix
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lib:libopenblas$secondaryArchSuffix
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# lib:libpango_1.0$secondaryArchSuffix
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lib:libpaper$secondaryArchSuffix
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lib:libpcre$secondaryArchSuffix
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lib:libpng16$secondaryArchSuffix
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lib:libquadmath$secondaryArchSuffix
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lib:libreadline$secondaryArchSuffix
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lib:libssl$secondaryArchSuffix
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# lib:libtcl8.6
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lib:libtiff$secondaryArchSuffix
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lib:libz$secondaryArchSuffix
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"
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BUILD_REQUIRES="
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haiku${secondaryArchSuffix}_devel
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devel:libbz2$secondaryArchSuffix
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devel:libcairo$secondaryArchSuffix
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devel:libcrypto$secondaryArchSuffix >= 3
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devel:libcurl$secondaryArchSuffix
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devel:libgettextpo$secondaryArchSuffix
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devel:libgfortran$secondaryArchSuffix
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devel:libgomp$secondaryArchSuffix
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devel:libiconv$secondaryArchSuffix
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devel:libicui18n$secondaryArchSuffix >= 74
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devel:libintl$secondaryArchSuffix
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devel:libjpeg$secondaryArchSuffix
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devel:liblapack$secondaryArchSuffix
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devel:liblzma$secondaryArchSuffix
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devel:libncursesw$secondaryArchSuffix
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devel:libnghttp2$secondaryArchSuffix
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devel:libopenblas$secondaryArchSuffix
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devel:libpango_1.0$secondaryArchSuffix
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devel:libpaper$secondaryArchSuffix >= 2
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devel:libpcre$secondaryArchSuffix
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devel:libpng16$secondaryArchSuffix
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devel:libquadmath$secondaryArchSuffix
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devel:libreadline$secondaryArchSuffix
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devel:libssl$secondaryArchSuffix
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# devel:libtclstub8.6
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devel:libtiff$secondaryArchSuffix
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devel:libX11$secondaryArchSuffix
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devel:libXmu$secondaryArchSuffix
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devel:libXt$secondaryArchSuffix
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devel:libz$secondaryArchSuffix
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"
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BUILD_PREREQUIRES="
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cmd:awk
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cmd:bison
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cmd:gcc$secondaryArchSuffix
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cmd:gfortran$secondaryArchSuffix
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cmd:grep
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# cmd:kpsewhich #texlive
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cmd:ld$secondaryArchSuffix
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cmd:less
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cmd:libtoolize$secondaryArchSuffix
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cmd:make
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# cmd:makeindex #texlive
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cmd:pcre2_config$secondaryArchSuffix
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# cmd:pdflatex #texlive
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# cmd:pdftex #texlive
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cmd:pkg_config$secondaryArchSuffix
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cmd:pwd
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cmd:sed
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cmd:texi2any
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cmd:which
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cmd:yacc
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"
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BUILD()
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{
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# From Alpine
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# Performance is more important than the size of R. Moreover, -O2 has
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# only minimal impact on the R package size (less then 1%)
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export CFLAGS="${CFLAGS/-Os/-O2}"
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export CPPFLAGS="${CPPFLAGS/-Os/-O2} -D_BSD_SOURCE"
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export CXXFLAGS="${CXXFLAGS/-Os/-O2}"
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export LIBS="-lnetwork -lbsd"
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runConfigure --omit-dirs "sysconfdir binDir" ./configure \
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--bindir=$commandBinDir \
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--sysconfdir="$sysconfDir/R" \
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--enable-R-shlib \
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--with-x=no \
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rdocdir="$docDir" \
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rincludedir=$includeDir \
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rsharedir="$dataDir/R"
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make $jobArgs
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make -C src/nmath/standalone shared $jobArgs
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}
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INSTALL()
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{
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make install
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make -C src/nmath/standalone shared install
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prepareInstalledDevelLib libRmath
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fixPkgconfig
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}
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TEST()
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{
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make check
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}
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@@ -13,9 +13,9 @@ variety of specific purposes but are not distributed with this package."
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HOMEPAGE="https://www.r-project.org/"
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COPYRIGHT="2024 The R Foundation for Statistical Computing"
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LICENSE="GNU GPL v2"
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REVISION="2"
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REVISION="1"
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SOURCE_URI="https://cloud.r-project.org/src/base/R-4/R-$portVersion.tar.gz"
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CHECKSUM_SHA256="1578cd603e8d866b58743e49d8bf99c569e81079b6a60cf33cdf7bdffeb817ec"
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CHECKSUM_SHA256="3b33ea113e0d1ddc9793874d5949cec2c7386f66e4abfb1cef9aec22846c3ce1"
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SOURCE_DIR="R-$portVersion"
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PATCHES="r-$portVersion.patchset"
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